Publikatsioonid
VALIK PROTEOOMIKA TUUMIKLABORIGA SEOTUD PUBLIKATSIOONE
Campbell, K., Westholm, J., Kasvandik, S., Di Bartolomeo, F., Mormino, M., Nielsen, J. (2020). Building blocks are synthesized on demand during the yeast cell cycle. Proceedings of the National Academy of Sciences, 117 (14), 7575–7583. https://doi.org/10.1073/pnas.1919535117.
Rooda, I., Hensen, K., Kaselt, B., Kasvandik, S., Pook, M., Kurg, A., Salumets, A., and Velthut-Meikas, A. (2020). Target prediction and validation of microRNAs expressed from FSHR and aromatase genes in human ovarian granulosa cells. Scientific reports 10, 2300. https://doi.org/10.1038/s41598-020-59186-x.
Kasvandik S., Saarma M., Kaart T., Rooda I., Velthut-Meikas A., Ehrenberg A., Gemzell K., Lalitkumar PG., Salumets A., Peters M. Uterine fluid proteins for minimally invasive assessment of endometrial receptivity. The Journal of Clinical Endocrinology & Metabolism, 2019.
Mets, T.; Kasvandik, S.; Saarma, M.; Maivali, U.; Tenson, T.; Kaldalu, N., Fragmentation of Escherichia coli mRNA by MazF and MqsR. Biochimie 2018, 156, 79-91.
Tamberg, N.; Tahk, S.; Koit, S.; Kristjuhan, K.; Kasvandik, S.; Kristjuhan, A.; Ilves, I., Keap1-MCM3 interaction is a potential coordinator of molecular machineries of antioxidant response and genomic DNA replication in metazoa. Scientific Reports 2018, 8.
Mutso, M.; Morro, A. M.; Smedberg, C.; Kasvandik, S.; Aquilimeba, M.; Teppor, M.; Tarve, L.; Lulla, A.; Lulla, V.; Saul, S.; Thaa, B.; McInerney, G. M.; Merits, A.; Varjak, M., Mutation of CD2AP and SH3KBP1 Binding Motif in Alphavirus nsP3 Hypervariable Domain Results in Attenuated Virus. Viruses-Basel 2018, 10, (5).
Goormaghtigh, F.; Fraikin, N.; Putrins, M.; Hallaert, T.; Hauryliuk, V.; Garcia-Pino, A.; Sjodin, A.; Kasvandik, S.; Udekwu, K.; Tenson, T.; Kaldalu, N.; Van Melderen, L., Reassessing the Role of Type II Toxin-Antitoxin Systems in Formation of Escherichia coli Type II Persister Cells. mBio 2018, 9, (3)
Kasak, L.; Naks, M.; Eek, P.; Piirsoo, A.; Bhadoria, R.; Starkov, P.; Saarma, M.; Kasvandik, S. & Piirsoo, M., Characterization of protein kinase ULK3 regulation by phosphorylation and inhibition by small molecule SU6668. Biochemistry 2018
Ahlstrand, T.; Torittu, A.; Elovaara, H.; Valimaa, H.; Pollanen, M. T.; Kasvandik, S.; Hogbom, M.; Ihalin, R., Interactions between the Aggregatibacter actinomycetemcomitans secretin HofQ and host cytokines indicate a link between natural competence and interleukin-8 uptake. Virulence 2018, 9, (1), 1205-1223
Eek, P., Poldemaa, K., Kasvandik, S., Jarving, I., and Samel, N. (2017) A PDZ-like domain mediates the dimerization of 11R-lipoxygenase. Biochimica et biophysica acta 1862, 1121-1128
Lahtvee, P. J., Sanchez, B. J., Smialowska, A., Kasvandik, S., Elsemman, I. E., Gatto, F., and Nielsen, J. (2017) Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast. Cell Systems 4, 495-504 e495
Huter, P., Arenz, S., Bock, L. V., Graf, M., Frister, J. O., Heuer, A., Peil, L., Starosta, A. L., Wohlgemuth, I., Peske, F., Novacek, J., Berninghausen, O., Grubmuller, H., Tenson, T., Beckmann, R., Rodnina, M. V., Vaiana, A. C., and Wilson, D. N. (2017) Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P. Molecular Cell 68, 515-527 e516
Resch, U., Tsatsaronis, J. A., Le Rhun, A., Stubiger, G., Rohde, M., Kasvandik, S., Holzmeister, S., Tinnefeld, P., Wai, S. N., and Charpentier, E. (2016) A Two-Component Regulatory System Impacts Extracellular Membrane-Derived Vesicle Production in Group A Streptococcus. mBio 7
Mumm, K., Ainsaar, K., Kasvandik, S., Tenson, T., and Horak, R. (2016) Responses of Pseudomonas putida to Zinc Excess Determined at the Proteome Level: Pathways Dependent and Independent of ColRS. Journal of proteome research 15, 4349-4368
Boggavarapu, N. R., Lalitkumar, S., Joshua, V., Kasvandik, S., Salumets, A., Lalitkumar, P. G., and Gemzell-Danielsson, K. (2016) Compartmentalized gene expression profiling of receptive endometrium reveals progesterone regulated ENPP3 is differentially expressed and secreted in glycosylated form. Scientific reports 6, 33811
Kurg, R., Reinsalu, O., Jagur, S., Ounap, K., Vosa, L., Kasvandik, S., Padari, K., Gildemann, K., and Ustav, M. (2016) Biochemical and proteomic characterization of retrovirus Gag based microparticles carrying melanoma antigens. Scientific reports 6, 29425
Aghajanova, L., Altmae, S., Kasvandik, S., Salumets, A., Stavreus-Evers, A., and Giudice, L. C. (2016) Stanniocalcin-1 expression in normal human endometrium and dysregulation in endometriosis. Fertility and sterility 106, 681-691 e681
Kasvandik, S., Samuel, K., Peters, M., Eimre, M., Peet, N., Roost, A. M., Padrik, L., Paju, K., Peil, L., and Salumets, A. (2016) Deep Quantitative Proteomics Reveals Extensive Metabolic Reprogramming and Cancer-Like Changes of Ectopic Endometriotic Stromal Cells. Journal of proteome research 15, 572-584
Tein, K., Kasvandik, S., Koks, S., Vasar, E., and Terasmaa, A. (2015) Prohormone convertase 2 activity is increased in the hippocampus of Wfs1 knockout mice. Frontiers in molecular neuroscience 8, 45
Reimund, M., Larsson, M., Kovrov, O., Kasvandik, S., Olivecrona, G., and Lookene, A. (2015) Evidence for Two Distinct Binding Sites for Lipoprotein Lipase on Glycosylphosphatidylinositol-anchored High Density Lipoprotein-binding Protein 1 (GPIHBP1). The Journal of biological chemistry 290, 13919-13934
Kasvandik, S., Sillaste, G., Velthut-Meikas, A., Mikelsaar, A. V., Hallap, T., Padrik, P., Tenson, T., Jaakma, U., Koks, S., and Salumets, A. (2015) Bovine sperm plasma membrane proteomics through biotinylation and subcellular enrichment. Proteomics 15, 1906-1920
Peil, L.; Starosta, A. L.; Lassak, J.; Atkinson, G. C.; Virumae, K.; Spitzer, M.; Tenson, T.; Jung, K.; Remme, J.; Wilson, D. N., Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P. Proc Natl Acad Sci U S A 2013, 110, (38), 15265-70
Varjak, M., Saul, S., Arike, L., Lulla, A., Peil, L., and Merits, A. (2013) Magnetic fractionation and proteomic dissection of cellular organelles occupied by the late replication complexes of Semliki Forest virus. Journal of virology 87, 10295-10312
Peil, L., Starosta, A. L., Virumae, K., Atkinson, G. C., Tenson, T., Remme, J., and Wilson, D. N. (2012) Lys34 of translation elongation factor EF-P is hydroxylated by YfcM. Nature chemical biology 8, 695-697
Arike, L., Valgepea, K., Peil, L., Nahku, R., Adamberg, K., and Vilu, R. (2012) Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli. Journal of proteomics 75, 5437-5448
Olspert, A., Peil, L., Hebrard, E., Fargette, D., and Truve, E. (2011) Protein-RNA linkage and post-translational modifications of two sobemovirus VPgs. The Journal of general virology 92, 445-452
Maloverjan, A., Piirsoo, M., Kasak, L., Peil, L., Osterlund, T., and Kogerman, P. (2010) Dual function of UNC-51-like kinase 3 (Ulk3) in the Sonic hedgehog signaling pathway. The Journal of biological chemistry 285, 30079-30090
Pulk, A., Liiv, A., Peil, L., Maivali, U., Nierhaus, K., and Remme, J. (2010) Ribosome reactivation by replacement of damaged proteins. Molecular microbiology 75, 801-814